Hotels With spa in Nagasaki Prefecture, Japan

Hotels With spa in Nagasaki Prefecture, Japan

Enter your dates for the latest hotel rates and availability.

Scroll down to see hotels
Filter by:
Hotel Star Rating
≤2345
Guest Rating
Amazing 9+Great 8+Good 7+Pleasant 6+

Top Hotels With spa - Nagasaki Prefecture

Choose your travel dates to see the latest prices
Most Booked
Lowest price
Closest to downtown
Highest Rated
99+
Hotels in Nagasaki Prefecture
Featured facilities: Sauna, Public baths
Great
228 reviews
9.2/10
1 night
From TWD 1,728
Check Availability
99+
Hotels in Nagasaki Prefecture
Featured facilities: Sauna, Public baths
Amazing
206 reviews
9.6/10
1 night
From TWD 3,338
Check Availability
99+
Hotels in Nagasaki Prefecture
A stay at Dormy Inn Nagasaki Shinchi Chinatown Hot Spring places you in the heart of Nagasaki, within a 5-minute walk of Nagasaki Dejima and Hamanomachi Arcade. This hotel is 0.2 mi (0.4 km) from Dejima Museum and 0.4 mi (0.6 km) from Shianbashi Alley. Take advantage of recreation opportunities such as a sauna, or other amenities including complimentary wireless internet access and a television in a common area. This hotel also features a reception hall and a vending machine. Enjoy a satisfying meal at HATAGO serving guests of Dormy Inn Nagasaki Shinchi Chinatown Hot Spring. Buffet breakfasts are available daily from 6:30 AM to 9:30 AM for a fee. Featured amenities include dry cleaning/laundry services, a 24-hour front desk, and luggage storage. Make yourself at home in one of the 187 air-conditioned rooms featuring refrigerators and flat-screen televisions. Your bed comes with down comforters and premium bedding. Complimentary wired and wireless internet access keeps you connected, and digital programming provides entertainment. Private bathrooms with shower/tub combinations feature complimentary toiletries and bidets.

"The air conditioning is individually adjustable and gets nice and cold. The shower pressure is good, and the bathroom was very clean. The mattress was comfortable, though the pillows could have been a bit higher. The quiet environment made it very easy to fall asleep. The room itself was spotless and had no unpleasant odors. The staff were exceptionally polite and always had bright, welcoming smiles. I would definitely choose to stay here again. The hotel's recreation room next to the sauna offers complimentary comic books. In terms of refreshments, they provide free cold lactic acid drinks in the morning, ice cream/popsicles from noon to afternoon, and freshly cooked ramen as a late-night supper. Conveniently, there's a convenience store and restaurants downstairs, and Nagasaki Shinchi Chinatown is right across the street. The hotel is also within easy walking distance of major attractions: 14 minutes to the museum and 13 minutes to the pier."
Great
181 reviews
9.0/10
1 night
From TWD 999
Check Availability
99+
Hotels in Nagasaki Prefecture
With a stay at Super Hotel Nagasaki Isahaya Natural Hot Spring in Isahaya, you'll be within a 5-minute drive of Megane Bridge and Isahaya Park. This spa hotel is 1.5 mi (2.5 km) from Moriyama Sports Community Square and 3 mi (4.8 km) from Kantaku no Sato. Take time to pamper yourself with a visit to the full-service spa. A complimentary buffet breakfast is served on weekdays from 6:30 AM to 8:30 AM and on weekends from 8:30 AM to 9:00 AM. Featured amenities include laundry facilities and an elevator. Make yourself at home in one of the 152 air-conditioned rooms featuring Smart televisions. Complimentary wireless internet access keeps you connected, and digital programming is available for your entertainment.

"The amenities (lotion, body cream, etc.) were excellent, and it was fun choosing five items. While the breakfast selection wasn't extensive, there were local dishes, which was nice. It got extremely crowded at certain times, so it's better to go at a different time. Parking is free."
Very Good
7 reviews
8.9/10
1 night
From TWD 1,316
Check Availability
99+
Hotels in Nagasaki Prefecture
Located in Sasebo, Yumihari No Oka Hotel is in a national park, a 1-minute drive from Yumiharidake Lookout and 5 minutes from Maritime Self-Defense Force Sasebo Museum. This hotel is 3.2 mi (5.2 km) from Kujukushima Aquarium and 3.4 mi (5.5 km) from Sasebo Harbor. Don't miss out on recreational opportunities including hot springs and a seasonal outdoor pool. Additional features at this hotel include complimentary wireless internet access, shopping on site, and a banquet hall. Satisfy your appetite with Mediterranean cuisine at Restaurant ILMARE, one of the hotel's 2 restaurants. Buffet breakfasts are available daily from 7:00 AM to 9:30 AM for a fee. Featured amenities include a 24-hour front desk, a safe deposit box at the front desk, and an elevator. A train station pick-up service is provided at no charge, and free self parking is available onsite. Make yourself at home in one of the 105 air-conditioned rooms featuring refrigerators and flat-screen televisions. Complimentary wireless internet access keeps you connected, and satellite programming is available for your entertainment. Private bathrooms with shower/tub combinations feature complimentary toiletries and hair dryers. Conveniences include phones, as well as desks and electric kettles.

"A pretty good hotel overall, but the hot spring management was a bit chaotic. There were a few ********* kids splashing around in the hot spring, which really ruined the experience. Other than that, the hotel was excellent, especially the value for money of the buffet, particularly dinner."
Great
99 reviews
9.2/10
1 night
From TWD 2,155
Check Availability
99+
Hotels in Nagasaki Prefecture
Located in Sasebo, Hotel Nikko Huis Ten Bosch is a 4-minute drive from Huis Ten Bosch and 6 minutes from Saikaibashi Park. This hotel is 8.4 mi (13.5 km) from Miuracho Catholic Church and 8.5 mi (13.7 km) from Sasebo Harbor. Take in the views from a garden and make use of amenities such as complimentary wireless internet access and a vending machine. Satisfy your appetite at Casual Restaurant, one of the hotel's 2 restaurants. Buffet breakfasts are available daily from 7:00 AM to 9:30 AM for a fee. Featured amenities include dry cleaning/laundry services, a 24-hour front desk, and multilingual staff. Self parking (subject to charges) is available onsite. Make yourself at home in one of the 377 guestrooms featuring refrigerators. Your bed comes with down comforters and premium bedding. Complimentary wireless internet access keeps you connected, and cable programming is available for your entertainment. Private bathrooms with showers feature complimentary toiletries and bidets.

"Private entrance to Huis Ten Bosch takes you almost directly to the flower fields. They provide free loaner umbrellas which was handy as it rained one day during our stay. Breakfast was decent with a variety of western and Japanese foods. It is nice that breakfast is offered for quite a while so you have flexibility when eating. They were very helpful with storing luggage early and picking it up late so we could spend our time enjoying Huis Ten Bosch without worrying. My husband had a guitar and they personally held it in a protected location as they also have automated luggae storage. Facilities were clean and maintained although not new. Front desk spoke flawless English. Overall a pleasant stay. "
Great
474 reviews
9.2/10
1 night
From TWD 2,538
Check Availability
86
Hotels in Nagasaki Prefecture
When you stay at Hotel Seiunso in Unzen, you'll be in the mountains, within a 5-minute drive of Unzen Jigoku Hell and Vidoro Museum. This ryokan is 1.4 mi (2.2 km) from Oshidori Pond and 5.7 mi (9.2 km) from Nitta Toge. Enjoy the recreation opportunities such as hot springs or make use of other amenities including complimentary wireless internet access. Getting to nearby attractions is a breeze with the complimentary area shuttle. At Hotel Seiunso, enjoy a satisfying meal at the restaurant. A complimentary Japanese breakfast is served daily from 7:00 AM to 10:00 AM. Featured amenities include complimentary newspapers in the lobby, luggage storage, and laundry facilities. Free self parking is available onsite. Stay in one of 63 guestrooms featuring LCD televisions. Complimentary wireless internet access is available to keep you connected. Bathrooms have complimentary toiletries and hair dryers. Conveniences include phones, as well as safes and blackout drapes/curtains.

"The hotel offers various types of hot springs, such as open-air baths and private baths. The rooms are also very clean, but the biggest inconvenience is that there are no showers available; you have to go to the hot spring area. The food for breakfast and dinner is acceptable, but a bit ordinary."
Very Good
41 reviews
8.7/10
1 night
From TWD 5,318
Check Availability
92
Hotels in Nagasaki Prefecture
With a stay at Hotel Flags Ishihaya Nagasaki in Isahaya, you'll be a 4-minute walk from Megane Bridge and 11 minutes by foot from Isahaya Park. This hotel is 1.4 mi (2.2 km) from Moriyama Sports Community Square and 2.8 mi (4.5 km) from Kantaku no Sato. Take in the views from a garden and make use of amenities such as complimentary wireless internet access and a banquet hall. Enjoy a meal at the restaurant, or stay in and take advantage of the hotel's room service (during limited hours). Full breakfasts are available daily from 6:30 AM to 10:00 AM for a fee. Featured amenities include complimentary newspapers in the lobby, dry cleaning/laundry services, and luggage storage. This hotel has 5 meeting rooms available for events. Free self parking is available onsite. Make yourself at home in one of the 67 guestrooms featuring refrigerators and flat-screen televisions. Complimentary wireless internet access is available to keep you connected. Bathrooms have complimentary toiletries and hair dryers. Conveniences include phones and safes, and housekeeping is provided daily.

"It is the best that you can enjoy free beer and knobs nuts until 10 pm. I was able to relax while reading the Kimetsu no Yaiba. When I stayed a few months ago, I felt that it was until 9 pm, but it changed."
Good
41 reviews
7.8/10
1 night
From TWD 1,061
Check Availability
99+
Hotels in Nagasaki Prefecture
Overlooking the city of Nagasaki, Hotel Amandi offers accommodations with a natural hot spring baths. Free WiFi is provided throughout, and the property is 1.3 mi from Nagasaki Museum of History. Parking is available on site free of charge, and free shuttle runs to/from JR Nagasaki Station. Guest rooms in the resort are equipped with a flat-screen TV. Every room is equipped with a shared bathroom with a bath, free toiletries and a hairdryer. All rooms will provide guests with a fridge. Guests at Hotel Amandi can enjoy a Full English/Irish or a Japanese breakfast. An on-site restaurant, Lotus, features city views and serves Japanese dishes prepared with local produce. The accommodations offers a sauna. You can play table tennis and billiards at the 3-star resort. For any tips on how to get around or what to do in the area, guests can ask at the reception. Popular points of interest near Hotel Amandi include Inasayama Observation Deck, 26 Martyrs Museum and Fukusaiji Temple. Nagasaki Airport is 12 mi away.

"Very nice hotel, the night view at night is very beautiful, the hot spring is very comfortable, the room is very old but the bed is very comfortable, you can go directly up the mountain to see the night view of Nagasaki. Very suitable for couples."
Good
37 reviews
7.8/10
1 night
From TWD 1,070
Check Availability
99+
Hotels in Nagasaki Prefecture
Located in Sasebo, HOTEL FLAGS KUJUKUSHIMA is by the ocean, within a 15-minute walk of Kujukushima Aquarium and Kujukushima Visitor Center. This beach hotel is 1.7 mi (2.8 km) from Kujukushima Zoological and Botanical Garden and 2.9 mi (4.7 km) from Yumiharidake Lookout. Take time to pamper yourself with a visit to the full-service spa. Additional features at this hotel include complimentary wireless internet access, concierge services, and gift shops/newsstands. Grab a bite at one of the hotel's 2 restaurants, or stay in and take advantage of the room service. Buffet breakfasts are available daily from 7 AM to 9 AM for a fee. Featured amenities include complimentary newspapers in the lobby, a 24-hour front desk, and luggage storage. Planning an event in Sasebo? This hotel has 9580 square feet (890 square meters) of space consisting of conference space and meeting rooms. A train station pick-up service is provided at no charge, and free self parking is available onsite. Make yourself at home in one of the 64 air-conditioned rooms featuring refrigerators. Complimentary wireless internet access is available to keep you connected. Bathrooms feature shower/tub combinations, complimentary toiletries, and bidets. Conveniences include safes and electric kettles, as well as phones with free international calls.

"I chose this hotel because it's near the Kujukushima sightseeing boat area, and even though the existing reviews aren't great, it was a pleasant surprise, and I highly recommend it. First, there's a shuttle bus to the hotel. There's no timetable on Ctrip, but it's much faster and easier than public transportation. Before 8 PM, wait at the bus stop to the left after exiting the west gate of Sasebo Station. After 8 PM, go to the bus stop outside the east gate. The minibus has the hotel name posted on the window; you have to find it yourself. The hotel receptionist's English is so-so. I booked a tatami room, which was indeed quite old, but it was spacious—the only 22-square-meter room I stayed in during this trip for the price of a budget hotel. There were only electrical outlets for the TV and refrigerator. The hotel has a natural hot spring bath. Free drinks are usually available in the lobby, self-service from machines."
Very Good
26 reviews
8.4/10
1 night
From TWD 3,324
Check Availability
See All Hotels With spa in Nagasaki Prefecture

Travelers Reviews of Nagasaki Prefecture Hotels

See all

Hotel Nikko Huis Ten Bosch

9,2/10
Great
Posted on Mar 7, 2026
Guest User
Private entrance to Huis Ten Bosch takes you almost directly to the flower fields. They provide free loaner umbrellas which was handy as it rained one day during our stay. Breakfast was decent with a variety of western and Japanese foods. It is nice that breakfast is offered for quite a while so you have flexibility when eating. They were very helpful with storing luggage early and picking it up late so we could spend our time enjoying Huis Ten Bosch without worrying. My husband had a guitar and they personally held it in a protected location as they also have automated luggae storage. Facilities were clean and maintained although not new. Front desk spoke flawless English. Overall a pleasant stay. 
Price per night from:TWD 2,538

I+Land Nagasaki

9,0/10
Great
Posted on Jun 8, 2025
Guest User
The location is a bit off the beaten path, making it ideal for self-driving tourists. Due to its proximity to nature, you might occasionally encounter a few insects in the rooms, but the hotel is generally clean and well-maintained. It boasts a wide array of recreational facilities, along with services such as restaurants, hot springs, and massages. The pricing is reasonable, offering good value for money, so you can easily spend a full and enjoyable vacation without leaving the hotel. I highly recommend it for families looking for a relaxing getaway!
Price per night from:TWD 8,055

Candeo Hotels Nagasaki Shinchi Chinatown

9,2/10
Great
Posted on May 5, 2026
Anonymous User
The room was fantastic! The lobby was also very bright, and there's an outdoor area with a great view. The open-air onsen on the top floor was absolutely amazing, super clean, and incredibly relaxing! The hotel is right above Chinatown, making it very convenient for getting around.
Price per night from:TWD 1,728

Hotel Dormy Inn Nagasaki Shinchichukagai

9,0/10
Great
Posted on Aug 27, 2025|Double Room-Non-Smoking
HKGuest User
The air conditioning is individually adjustable and gets nice and cold. The shower pressure is good, and the bathroom was very clean. The mattress was comfortable, though the pillows could have been a bit higher. The quiet environment made it very easy to fall asleep. The room itself was spotless and had no unpleasant odors. The staff were exceptionally polite and always had bright, welcoming smiles. I would definitely choose to stay here again. The hotel's recreation room next to the sauna offers complimentary comic books. In terms of refreshments, they provide free cold lactic acid drinks in the morning, ice cream/popsicles from noon to afternoon, and freshly cooked ramen as a late-night supper. Conveniently, there's a convenience store and restaurants downstairs, and Nagasaki Shinchi Chinatown is right across the street. The hotel is also within easy walking distance of major attractions: 14 minutes to the museum and 13 minutes to the pier.
Price per night from:TWD 999

Yumihari-No-OKA Hotel

9,2/10
Great
Posted on Feb 12, 2026
Dashetucai
A pretty good hotel overall, but the hot spring management was a bit chaotic. There were a few ********* kids splashing around in the hot spring, which really ruined the experience. Other than that, the hotel was excellent, especially the value for money of the buffet, particularly dinner.
Price per night from:TWD 2,155

Hotel Flags Sasebo KujuKusima

8,4/10
Very Good
Posted on Nov 30, 2024|Main Building - Japanese-Style Room
Guest User
I chose this hotel because it's near the Kujukushima sightseeing boat area, and even though the existing reviews aren't great, it was a pleasant surprise, and I highly recommend it. First, there's a shuttle bus to the hotel. There's no timetable on Ctrip, but it's much faster and easier than public transportation. Before 8 PM, wait at the bus stop to the left after exiting the west gate of Sasebo Station. After 8 PM, go to the bus stop outside the east gate. The minibus has the hotel name posted on the window; you have to find it yourself. The hotel receptionist's English is so-so. I booked a tatami room, which was indeed quite old, but it was spacious—the only 22-square-meter room I stayed in during this trip for the price of a budget hotel. There were only electrical outlets for the TV and refrigerator. The hotel has a natural hot spring bath. Free drinks are usually available in the lobby, self-service from machines.
Price per night from:TWD 3,324

Hilton Nagasaki

9,6/10
Amazing
Posted on Feb 24, 2026
splat
amazing! best hotel experience on my japan trip! service : amazing service from hotel staff & reception was very friendly [10/10] room : very spacious & very clean with many amenities! [10/10] location : 2-3mins walk, just opposite of nagasaki station [10/10] cost : amazing value given the great service & quality ($162 sgd for 2) [10/10] miku & I loved our stay! ありがとうございます!
Price per night from:TWD 3,338

The Paradise Garden Sasebo

8,3/10
Very Good
Posted on Apr 3, 2024|New Wing Standard, Twin
perezjbm
Beautiful and clean hotel. 15 mins by taxi to Huis Ten Bosch. Be mindful of your time leaving to he train station by taxi if you're going to the Fukuoka Airport. It could be tight. Otherwise, it's pretty inside. The food was pretty good and pretty modern compared to other hotels we've seen closer to the theme park. I'd definitely stay again.
Price per night from:TWD 1,439

Hotel Seiunso

8,7/10
Very Good
Posted on Jan 13, 2026
悠遊行
The hotel offers various types of hot springs, such as open-air baths and private baths. The rooms are also very clean, but the biggest inconvenience is that there are no showers available; you have to go to the hot spring area. The food for breakfast and dinner is acceptable, but a bit ordinary.
Price per night from:TWD 5,318

Ryokan Yamadaya

8,0/10
Very Good
Posted on May 22, 2024
HYEONGSEOK
고민하고 계시다면 고민하실 필요 없다고 말씀드리고 싶네요 정말 좋은 경험이었습니다 모든직원이 매우 친절하시고 상냥했으며 시설은 오래된 느낌이나 관리가 잘되어 있어 오히려 좋았습니다 객실은 다다미방이었는데로 옛날느낌이 살아 있고 바다를 바로 바라볼 수 있어서 근사했습니다 온천 또한 1층도 좋았지만 5층 옥상의 온천은 19:30이후부터 30분 간격으로 객실당 프라이빗하게 이용할 수 있었고 그 이전에는 자유롭게 이용 가능한데 파란하늘과 바다를 바라보며 온천을 하는것이 너무 기분이 좋았네요 식사 또한 석식은 물론 조식도 아주 정갈하고 하나하나 다 맛있어서 싹 비우게 되었네요 여행와서 제대로 대접받는 느낌을 받고 왔네요 강력하게 추천해요
Price per night from:TWD 3,002

Frequently Asked Questions

How do I book a hotel on Trip.com?

To book a hotel on Trip.com, simply enter your destination, travel dates, and the number of guests on the page. Then, browse through the available hotels and select the one you want to book. Follow the prompts to enter your payment information and complete the booking.

How do I get hotel deals on Trip.com?

There are several ways to find affordable hotels on Trip.com. You can narrow down your search results by filtering hotels according to your preferred price range, or you can sort the results by price to view the cheapest options first.

Where can I find hotel deals on Trip.com?

Trip.com offers a wide variety of hotel deals and promotions that are available throughout the year. You can easily find these special offers on our deals page. What's more, if you are a member of our loyalty program, you can sign in to your account and discover exclusive discounted rates at hotel list pages.

How can I get lower prices for hotels?

Sometimes booking hotels midweek is cheaper, but it also depends on the season.

How many hotels are listed on Trip.com?

You can find over 1.5 million hotels in more than 230 countries or regions on Trip.com. Haven't decided which hotel to book? Browse our site to get ideas!

Can I cancel or change my hotel bookings on Trip.com?

It depends on the hotel policy and date of cancellation. Please check the policy section of the related hotel pages. To cancel or change your bookings, sign in to your Trip.com account, go to "My Bookings", and follow the instructions.

How do I contact Trip.com customer support?

You can contact Trip.com's 24/7 customer support by visiting the Help Center on Trip.com and submitting a request. You can also contact us by phone or service chat, depending on your location.

Property Information for Tourists

Total properties19
Number of reviews1,600
Weekday Avg. PriceTWD 8,556
Weekend Avg. PriceTWD 9,587