Hotels With spa in Nagasaki Prefecture, Japan

Hotels With spa in Nagasaki Prefecture, Japan

Enter your dates for the latest hotel rates and availability.

Scroll down to see hotels
Filter by:
Hotel Star Rating
≤2345
Guest Rating
Amazing 9+Great 8+Good 7+Pleasant 6+

Top Hotels With spa - Nagasaki Prefecture

Choose your travel dates to see the latest prices
Most Booked
Lowest price
Closest to downtown
Highest Rated
99+
Hotels in Nagasaki Prefecture
Located in Sasebo, Hotel Nikko Huis Ten Bosch is a 1-minute drive from Huis Ten Bosch and 6 minutes from Saikaibashi Park. This hotel is 8.4 mi (13.5 km) from Miuracho Catholic Church and 8.5 mi (13.7 km) from Sasebo Harbor. Take in the views from a garden and make use of amenities such as complimentary wireless internet access and a vending machine. Satisfy your appetite at Casual Restaurant, one of the hotel's 2 restaurants. Buffet breakfasts are available daily from 7:00 AM to 9:30 AM for a fee. Featured amenities include dry cleaning/laundry services, a 24-hour front desk, and multilingual staff. Self parking (subject to charges) is available onsite. Make yourself at home in one of the 377 guestrooms featuring refrigerators. Your bed comes with down comforters and premium bedding. Complimentary wireless internet access keeps you connected, and cable programming is available for your entertainment. Private bathrooms with showers feature complimentary toiletries and bidets.

"The hotel is decent for a one night stay. Though I would describe the interiors of the room as pretty retro and dated in the 90s. The hotel staff are very warm and friendly, and the room is clean. It’s acceptable for a short stay. The hotel is only a stone throw away from Huis Ten Bosch’s entrance where you need to get your tickets. And you can return to the hotel via the back gate. There’s a Lawson near Huis Ten Bosch’s entrance as well. I would say it’s probably a 3 minutes walk. Carpark is available directly in front of the hotel, with charges at 1000¥ per night. There’re carpark wardens to guide you. Would return for a fuss free stay if I were to visit Huis Ten Bosch again."
Great
506 reviews
9.2/10
1 night
From MXN$1,143
Check Availability
99+
Hotels in Nagasaki Prefecture
With a stay at i+Land nagasaki in Nagasaki, you'll be 0.1 mi (0.2 km) from Magome Catholic Church and 10.2 mi (16.4 km) from Oura Church. This beach hotel is 10.2 mi (16.4 km) from Gunkanjima Digital Museum. Pamper yourself with a visit to the spa, which offers massages. If you're looking for recreational opportunities, you'll find hot springs and bicycles to rent. Additional amenities at this hotel include complimentary wireless internet access, concierge services, and gift shops/newsstands. Satisfy your appetite with Japanese cuisine at Uraraka, one of the hotel's 2 restaurants. Quench your thirst with your favorite drink at the bar/lounge. Featured amenities include complimentary newspapers in the lobby, dry cleaning/laundry services, and a 24-hour front desk. This hotel has 5 meeting rooms available for events. A train station pick-up service is provided at no charge, and free self parking is available onsite. Make yourself at home in one of the 220 guestrooms featuring refrigerators. Complimentary wireless internet access is available to keep you connected. Bathrooms have bidets and hair dryers. Conveniences include phones, as well as safes and desks.

"The location is a bit off the beaten path, making it ideal for self-driving tourists. Due to its proximity to nature, you might occasionally encounter a few insects in the rooms, but the hotel is generally clean and well-maintained. It boasts a wide array of recreational facilities, along with services such as restaurants, hot springs, and massages. The pricing is reasonable, offering good value for money, so you can easily spend a full and enjoyable vacation without leaving the hotel. I highly recommend it for families looking for a relaxing getaway!"
Great
175 reviews
9.1/10
1 night
From MXN$2,569
Check Availability
99+
Hotels in Nagasaki Prefecture
Featured facilities: Sauna, Bathing facilities
Great
249 reviews
9.3/10
1 night
From MXN$1,410
Check Availability
99+
Hotels in Nagasaki Prefecture
With a stay at Super Hotel Nagasaki Isahaya Natural Hot Spring in Isahaya, you'll be within a 5-minute drive of Megane Bridge and Isahaya Park. This spa hotel is 1.5 mi (2.5 km) from Moriyama Sports Community Square and 3 mi (4.8 km) from Kantaku no Sato. Take time to pamper yourself with a visit to the full-service spa. A complimentary buffet breakfast is served on weekdays from 6:30 AM to 8:30 AM and on weekends from 8:30 AM to 9:00 AM. The front desk is staffed during limited hours. Stay in one of 152 guestrooms featuring Smart televisions. Complimentary wireless internet access keeps you connected, and digital programming is available for your entertainment. Private bathrooms with shower/tub combinations feature complimentary toiletries and bidets. Conveniences include desks, and housekeeping is provided on request.

"The amenities (lotion, body cream, etc.) were excellent, and it was fun choosing five items. While the breakfast selection wasn't extensive, there were local dishes, which was nice. It got extremely crowded at certain times, so it's better to go at a different time. Parking is free."
Very Good
10 reviews
8.9/10
1 night
From MXN$722
Check Availability
99+
Hotels in Nagasaki Prefecture
Featured facilities: Sauna, Bathing facilities
Amazing
212 reviews
9.6/10
1 night
From MXN$3,028
Check Availability
99+
Hotels in Nagasaki Prefecture
With a stay at Hotel Flags Ishihaya Nagasaki in Isahaya, you'll be a 4-minute walk from Megane Bridge and 11 minutes by foot from Isahaya Park. This hotel is 1.4 mi (2.2 km) from Moriyama Sports Community Square and 2.8 mi (4.5 km) from Kantaku no Sato. Take in the views from a garden and make use of amenities such as complimentary wireless internet access and a banquet hall. Enjoy a meal at the restaurant, or stay in and take advantage of the hotel's room service (during limited hours). Full breakfasts are available daily from 6:30 AM to 10:00 AM for a fee. Featured amenities include complimentary newspapers in the lobby, dry cleaning/laundry services, and luggage storage. This hotel has 5 meeting rooms available for events. Free self parking is available onsite. Make yourself at home in one of the 67 guestrooms featuring refrigerators and flat-screen televisions. Complimentary wireless internet access is available to keep you connected. Bathrooms have complimentary toiletries and hair dryers. Conveniences include phones and safes, and housekeeping is provided daily.

"It is the best that you can enjoy free beer and knobs nuts until 10 pm. I was able to relax while reading the Kimetsu no Yaiba. When I stayed a few months ago, I felt that it was until 9 pm, but it changed."
Good
42 reviews
7.8/10
1 night
From MXN$576
Check Availability
99+
Hotels in Nagasaki Prefecture
Located in Sasebo, Yumihari No Oka Hotel is in a national park, a 1-minute drive from Yumiharidake Lookout and 5 minutes from Maritime Self-Defense Force Sasebo Museum. This hotel is 3.2 mi (5.2 km) from Kujukushima Aquarium and 3.4 mi (5.5 km) from Sasebo Harbor. Don't miss out on recreational opportunities including hot springs and a seasonal outdoor pool. Additional features at this hotel include complimentary wireless internet access, shopping on site, and a banquet hall. Satisfy your appetite with Mediterranean cuisine at Restaurant ILMARE, one of the hotel's 2 restaurants. Buffet breakfasts are available daily from 7:00 AM to 9:30 AM for a fee. Featured amenities include a 24-hour front desk, a safe deposit box at the front desk, and an elevator. A train station pick-up service is provided at no charge, and free self parking is available onsite. Make yourself at home in one of the 105 air-conditioned rooms featuring refrigerators and flat-screen televisions. Complimentary wireless internet access keeps you connected, and satellite programming is available for your entertainment. Private bathrooms with shower/tub combinations feature complimentary toiletries and hair dryers. Conveniences include phones, as well as desks and electric kettles.

"A pretty good hotel overall, but the hot spring management was a bit chaotic. There were a few ********* kids splashing around in the hot spring, which really ruined the experience. Other than that, the hotel was excellent, especially the value for money of the buffet, particularly dinner."
Great
103 reviews
9.2/10
1 night
From MXN$1,502
Check Availability
99+
Hotels in Nagasaki Prefecture
Located in Sasebo, HOTEL FLAGS KUJUKUSHIMA is by the ocean, within a 15-minute walk of Kujukushima Aquarium and Kujukushima Visitor Center. This beach hotel is 1.7 mi (2.8 km) from Kujukushima Zoological and Botanical Garden and 2.9 mi (4.7 km) from Yumiharidake Lookout. Take time to pamper yourself with a visit to the full-service spa. Additional features at this hotel include complimentary wireless internet access, concierge services, and gift shops/newsstands. Grab a bite at one of the hotel's 2 restaurants, or stay in and take advantage of the room service. Buffet breakfasts are available daily from 7 AM to 9 AM for a fee. Featured amenities include complimentary newspapers in the lobby, a 24-hour front desk, and luggage storage. Planning an event in Sasebo? This hotel has 9580 square feet (890 square meters) of space consisting of conference space and meeting rooms. A train station pick-up service is provided at no charge, and free self parking is available onsite. Make yourself at home in one of the 64 air-conditioned rooms featuring refrigerators. Complimentary wireless internet access is available to keep you connected. Bathrooms feature shower/tub combinations, complimentary toiletries, and bidets. Conveniences include safes and electric kettles, as well as phones with free international calls.

"I choose this hotel just because it’s close to kujuku cruise and has large parking space. Don’t expect too much except its location. There’s a free shuttle to Sasebo station. I wait for the last shuttle back to the hotel at the drop off/ pick up point. I was there more than 10 minutes before but the shuttle didn’t come. Luckily there’s a taxi station nearby. But it’s disappointing."
Very Good
25 reviews
8.3/10
1 night
From MXN$1,518
Check Availability
99+
Hotels in Nagasaki Prefecture
A stay at Dormy Inn Nagasaki Shinchi Chinatown Hot Spring places you in the heart of Nagasaki, within a 5-minute walk of Nagasaki Dejima and Hamanomachi Arcade. This hotel is 0.2 mi (0.4 km) from Dejima Museum and 0.4 mi (0.6 km) from Shianbashi Alley. Take advantage of recreation opportunities such as a sauna, or other amenities including complimentary wireless internet access and a television in a common area. This hotel also features a reception hall and a vending machine. Enjoy a satisfying meal at HATAGO serving guests of Dormy Inn Nagasaki Shinchi Chinatown Hot Spring. Buffet breakfasts are available daily from 6:30 AM to 9:30 AM for a fee. Featured amenities include dry cleaning/laundry services, a 24-hour front desk, and luggage storage. Make yourself at home in one of the 187 air-conditioned rooms featuring refrigerators and flat-screen televisions. Your bed comes with down comforters and premium bedding. Complimentary wired and wireless internet access keeps you connected, and digital programming provides entertainment. Private bathrooms with shower/tub combinations feature complimentary toiletries and bidets.

"A great location to be for Nagasaki. Chinatown is right outside the door, a street car is right down the street that goes to all the tourist destinations, and walking distance to many other options for food, bars, etc. The rooms are exactly as pictured, a bit dated but not in bad shape. Only thing is some older ports in the bed/desk haven't been cleaned in a while. Sheets, bathroom and towels are all clean so no complaints there. The baths were clean and always a great addition to the stay in Hotel Dormy Inn's, but it is rather basic so don't expect an extravagant design. The ramen as always was great and the breakfast offered lots of diverse options that were all very tasty!"
Great
185 reviews
9.1/10
1 night
From MXN$839
Check Availability
99+
Hotels in Nagasaki Prefecture
When you stay at GOTO RETREAT by Onko Chishin in Goto, you'll be in the historical district, just steps from Hidden Christian Sites in the Nagasaki Region and Abunze Visitor Center. This luxury hotel is 1.9 mi (3 km) from Onidake Shrine and 4.2 mi (6.8 km) from Kojushi Beach. Treat yourself with body treatments and facials. Additional amenities at this hotel include complimentary wireless internet access, concierge services, and gift shops/newsstands. Enjoy a meal at the restaurant or snacks in the hotel's coffee shop/cafe. Mingle with other guests at the complimentary reception, held daily. Quench your thirst with your favorite drink at the bar/lounge. Local cuisine breakfasts are available daily from 7:00 AM to 9:00 AM for a fee. Featured amenities include a 24-hour front desk, luggage storage, and a safe deposit box at the front desk. Free self parking is available onsite. Treat yourself to a stay in one of the 26 individually decorated guestrooms, featuring heated floors and LCD televisions. Your pillowtop bed comes with premium bedding. Digital programming and smart speakers are provided for your entertainment, while complimentary wireless internet access keeps you connected. Conveniences include safes and desks, and housekeeping is provided on request.

"入住Goto Retreat,才真正體會到“温故知新”的意境。傳統的和洋式房間靜謐雅緻,窗外就是太平洋的廣闊,泡完温泉喝上一杯抹茶,感覺所有疲憊都被治癒了。 staffKEIU楊的服務細緻入微,讓人有種回家的安心感。在米其林餐廳享用早餐和晚餐,都是當地新鮮食材做的懷石料理,每一道都精緻美味。充分體現了料理長山本祐輔高超的烹飪技巧。為了這頓懷石料理,就值得再來。總之,這是一次超捧的住宿體驗!"
Great
12 reviews
9.2/10
1 night
From MXN$6,195
Check Availability
See All Hotels With spa in Nagasaki Prefecture

Travelers Reviews of Nagasaki Prefecture Hotels

See all

Hotel Nikko Huis Ten Bosch

9,2/10
Great
Posted on Feb 21, 2026|Standard Twin Room
JPFlightSeeker
The hotel is decent for a one night stay. Though I would describe the interiors of the room as pretty retro and dated in the 90s. The hotel staff are very warm and friendly, and the room is clean. It’s acceptable for a short stay. The hotel is only a stone throw away from Huis Ten Bosch’s entrance where you need to get your tickets. And you can return to the hotel via the back gate. There’s a Lawson near Huis Ten Bosch’s entrance as well. I would say it’s probably a 3 minutes walk. Carpark is available directly in front of the hotel, with charges at 1000¥ per night. There’re carpark wardens to guide you. Would return for a fuss free stay if I were to visit Huis Ten Bosch again.
Price per night from:MXN$1,143

I+Land Nagasaki

9,1/10
Great
Posted on Jun 8, 2025
Guest User
The location is a bit off the beaten path, making it ideal for self-driving tourists. Due to its proximity to nature, you might occasionally encounter a few insects in the rooms, but the hotel is generally clean and well-maintained. It boasts a wide array of recreational facilities, along with services such as restaurants, hot springs, and massages. The pricing is reasonable, offering good value for money, so you can easily spend a full and enjoyable vacation without leaving the hotel. I highly recommend it for families looking for a relaxing getaway!
Price per night from:MXN$2,569

Candeo Hotels Nagasaki Shinchi Chinatown

9,3/10
Great
Posted on May 5, 2026|Queen Room-Non-Smoking
CNAnonymous User
The room was fantastic! The lobby was also very bright, and there's an outdoor area with a great view. The open-air onsen on the top floor was absolutely amazing, super clean, and incredibly relaxing! The hotel is right above Chinatown, making it very convenient for getting around.
Price per night from:MXN$1,410

Hotel Dormy Inn Nagasaki Shinchichukagai

9,1/10
Great
Posted on May 21, 2026
USGuest User
A great location to be for Nagasaki. Chinatown is right outside the door, a street car is right down the street that goes to all the tourist destinations, and walking distance to many other options for food, bars, etc. The rooms are exactly as pictured, a bit dated but not in bad shape. Only thing is some older ports in the bed/desk haven't been cleaned in a while. Sheets, bathroom and towels are all clean so no complaints there. The baths were clean and always a great addition to the stay in Hotel Dormy Inn's, but it is rather basic so don't expect an extravagant design. The ramen as always was great and the breakfast offered lots of diverse options that were all very tasty!
Price per night from:MXN$839

Yumihari-No-OKA Hotel

9,2/10
Great
Posted on Feb 12, 2026
Dashetucai
A pretty good hotel overall, but the hot spring management was a bit chaotic. There were a few ********* kids splashing around in the hot spring, which really ruined the experience. Other than that, the hotel was excellent, especially the value for money of the buffet, particularly dinner.
Price per night from:MXN$1,502

Hotel Flags Sasebo KujuKusima

8,3/10
Very Good
Posted on Dec 13, 2024|Main Building - Twin Room
HKGuest User
I choose this hotel just because it’s close to kujuku cruise and has large parking space. Don’t expect too much except its location. There’s a free shuttle to Sasebo station. I wait for the last shuttle back to the hotel at the drop off/ pick up point. I was there more than 10 minutes before but the shuttle didn’t come. Luckily there’s a taxi station nearby. But it’s disappointing.
Price per night from:MXN$1,518

Hilton Nagasaki

9,6/10
Amazing
Posted on Feb 24, 2026
splat
amazing! best hotel experience on my japan trip! service : amazing service from hotel staff & reception was very friendly [10/10] room : very spacious & very clean with many amenities! [10/10] location : 2-3mins walk, just opposite of nagasaki station [10/10] cost : amazing value given the great service & quality ($162 sgd for 2) [10/10] miku & I loved our stay! ありがとうございます!
Price per night from:MXN$3,028

The Paradise Garden Sasebo

8,0/10
Very Good
Posted on Apr 3, 2024|New Wing Standard, Twin
perezjbm
Beautiful and clean hotel. 15 mins by taxi to Huis Ten Bosch. Be mindful of your time leaving to he train station by taxi if you're going to the Fukuoka Airport. It could be tight. Otherwise, it's pretty inside. The food was pretty good and pretty modern compared to other hotels we've seen closer to the theme park. I'd definitely stay again.
Price per night from:MXN$877

Hotel Seiunso

8,8/10
Very Good
Posted on Jan 26, 2026
HWLim
Excellent stay in this hotel and staff is very helpful. Room is clean and looks recently renovated. Breakfast and dinner were delicious and filling; outdoor onsen was not crowded. Felt relaxed during my stay here 😄 Especially grateful to Mr Inoue, who was a great help in sorting out my booking issue. Great hospitality!
Price per night from:MXN$3,637

Ryokan Yamadaya

8,0/10
Very Good
Posted on May 22, 2024
HYEONGSEOK
고민하고 계시다면 고민하실 필요 없다고 말씀드리고 싶네요 정말 좋은 경험이었습니다 모든직원이 매우 친절하시고 상냥했으며 시설은 오래된 느낌이나 관리가 잘되어 있어 오히려 좋았습니다 객실은 다다미방이었는데로 옛날느낌이 살아 있고 바다를 바로 바라볼 수 있어서 근사했습니다 온천 또한 1층도 좋았지만 5층 옥상의 온천은 19:30이후부터 30분 간격으로 객실당 프라이빗하게 이용할 수 있었고 그 이전에는 자유롭게 이용 가능한데 파란하늘과 바다를 바라보며 온천을 하는것이 너무 기분이 좋았네요 식사 또한 석식은 물론 조식도 아주 정갈하고 하나하나 다 맛있어서 싹 비우게 되었네요 여행와서 제대로 대접받는 느낌을 받고 왔네요 강력하게 추천해요
Price per night from:MXN$2,045

Frequently Asked Questions

How do I book a hotel on Trip.com?

To book a hotel on Trip.com, simply enter your destination, travel dates, and the number of guests on the page. Then, browse through the available hotels and select the one you want to book. Follow the prompts to enter your payment information and complete the booking.

How do I get hotel deals on Trip.com?

There are several ways to find affordable hotels on Trip.com. You can narrow down your search results by filtering hotels according to your preferred price range, or you can sort the results by price to view the cheapest options first.

Where can I find hotel deals on Trip.com?

Trip.com offers a wide variety of hotel deals and promotions that are available throughout the year. You can easily find these special offers on our deals page. What's more, if you are a member of our loyalty program, you can sign in to your account and discover exclusive discounted rates at hotel list pages.

How can I get lower prices for hotels?

Sometimes booking hotels midweek is cheaper, but it also depends on the season.

How many hotels are listed on Trip.com?

You can find over 1.5 million hotels in more than 230 countries or regions on Trip.com. Haven't decided which hotel to book? Browse our site to get ideas!

Can I cancel or change my hotel bookings on Trip.com?

It depends on the hotel policy and date of cancellation. Please check the policy section of the related hotel pages. To cancel or change your bookings, sign in to your Trip.com account, go to "My Bookings", and follow the instructions.

How do I contact Trip.com customer support?

You can contact Trip.com's 24/7 customer support by visiting the Help Center on Trip.com and submitting a request. You can also contact us by phone or service chat, depending on your location.

Property Information for Tourists

Total properties20
Number of reviews1,692
Weekday Avg. PriceMXN5,200
Weekend Avg. PriceMXN5,844